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Ritchie Torres, center, is one of five City Council members whose bid to file an amicus brief challenging the de Blasio administration on its property tax system was rejected this week by a judge. Credit Stephanie Keith for The New York Times

The New York City Council, ever eager to establish independence from Mayor Bill de Blasio, suffered a setback this week in a legal clash over the separation of powers in a Manhattan court.

At issue is the ability of five Council members to file an amicus brief on behalf of plaintiffs in a lawsuit challenging the city’s property tax system. The members sought, in their official capacity representing some 800,000 residents, to register their contention that the property tax system discriminates against minorities and is unfair to homeowners and renters alike.

The de Blasio administration argued that doing so was not allowed; it contended that the members can only be represented by the Law Department, and the Law Department is already representing the city in the case.

Essentially, the city argued, the City Charter prohibits this sort of friend-of-the-court filing, even when the opinion expressed by the city’s legislative branch is directly at odds with that of the executive.

On Wednesday, a judge in State Supreme Court in Manhattan agreed with the city and blocked the five members — a diverse group that includes Democratic and Republican officials from the Bronx, Brooklyn and Queens — from filing their brief.

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The judge said that the City Charter did not allow them, in their official capacity, to hire an outside lawyer to represent them, though they could do so as private individuals.

“Because the corporation counsel will not represent them, the movants may not file their proposed amicus brief,” Justice Gerald Lebovits wrote in a four-page decision that came after arguments on the issue in November.

“We’re obviously disappointed in the result,” said Noreen Anne Kelly, a lawyer with McGuireWoods who is representing the five Council members. “We are considering an appeal.”

Councilman Ritchie Torres of the Bronx, one of the five, welcomed an appeal and said he believed the case had been wrongly decided.

“I maintain that I have a right to submit an amicus brief in my capacity as a duly elected official,” he said. “And the administration’s decision to challenge that right is a gratuitous assault on the independence of the Council.”

The decision has no bearing on the underlying property tax lawsuit, which was filed in April against the city and the state by Tax Equity Now New York, a group that includes homeowners, renters, real estate developers, the N.A.A.C.P., the Citizens Budget Commission and others. The city is hoping to persuade the court to dismiss the case.

Lawyers for Tax Equity Now New York said the city’s move to challenge the Council members’ brief appeared to be part of a strategy to drag out the proceedings.

“I do absolutely think that this is part of an approach to delay the inevitable: The city has to deal with this inequitable, discriminatory system that had no rhyme or reason to it,” said Jonathan Lippman, the state’s former chief judge and a partner at the law firm Latham & Watkins, which is representing the plaintiffs.

“This is an issue of fairness, and in every way the city and the state should not be moving even to dismiss the proceeding,” Mr. Lippman said.

A spokesman for the city’s Law Department, Nicholas Paolucci, said the lawmakers are welcome to share their views “as individuals.”

“We are not opposed to the effort by these council members to be heard on this important issue to the extent that they represent their views as individuals and not as city officials,” Mr. Paolucci said.

Mr. de Blasio has said the property tax system "is broken in many ways” but believes the issue should be resolved through legislation and not in the courts.

“When you put things in a hand of a judge, you never know where it’s going,” he said in November. “I’ve said it very clearly; we’ll gather all the stakeholders. It will probably take a year or two to complete this work.”

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